xrf_explorer.server package

Subpackages

• xrf_explorer.server.color_segmentation package
  • Submodules
  • xrf_explorer.server.color_segmentation.color_seg module
    • calculate_color_difference()
    • combine_bitmasks()
    • convert_to_hex()
    • get_clusters_using_k_means()
    • get_elemental_clusters_using_k_means()
    • image_to_lab()
    • image_to_rgb()
    • lab_to_rgb()
    • merge_similar_colors()
    • reshape_image()
    • rgb_to_hex()
    • rgb_to_lab()
    • save_bitmask_as_png()
  • xrf_explorer.server.color_segmentation.helper module
    • get_path_to_cs_folder()
  • Module contents
• xrf_explorer.server.dim_reduction package
  • Submodules
  • xrf_explorer.server.dim_reduction.embedding module
    • apply_umap()
    • filter_elemental_cube()
    • generate_embedding()
  • xrf_explorer.server.dim_reduction.general module
    • create_image_of_indices_to_embedding()
    • get_image_of_indices_to_embedding()
    • get_path_to_dr_folder()
    • imwrite()
    • valid_element()
  • xrf_explorer.server.dim_reduction.overlay module
    • create_element_overlay()
    • create_embedding_image()
    • create_image_overlay()
    • cvtColor()
    • plot_embedding_with_overlay()
  • Module contents
• xrf_explorer.server.file_system package
  • Subpackages
    • xrf_explorer.server.file_system.cubes package
      • Submodules
      • xrf_explorer.server.file_system.cubes.convert_csv module
      • xrf_explorer.server.file_system.cubes.convert_dms module
      • xrf_explorer.server.file_system.cubes.elemental module
      • xrf_explorer.server.file_system.cubes.spectral module
      • Module contents
    • xrf_explorer.server.file_system.sources package
      • Submodules
      • xrf_explorer.server.file_system.sources.data_listing module
      • Module contents
    • xrf_explorer.server.file_system.workspace package
      • Submodules
      • xrf_explorer.server.file_system.workspace.contextual_images module
      • xrf_explorer.server.file_system.workspace.file_access module
      • xrf_explorer.server.file_system.workspace.workspace_handler module
      • Module contents
  • Submodules
  • xrf_explorer.server.file_system.helper module
    • data_source_name_from_cube_path()
    • get_config()
    • get_path_to_generated_folder()
    • set_config()
  • Module contents
• xrf_explorer.server.image_register package
  • Submodules
  • xrf_explorer.server.image_register.register_image module
    • apply_perspective_transformation()
    • compute_fitting_dimensions_by_aspect()
    • getPerspectiveTransform()
    • get_image_registered_to_data_cube()
    • imread()
    • imwrite()
    • inverse_register_image()
    • load_image_to_register()
    • load_points()
    • load_points_dict()
    • pad_image_to_match_size()
    • register_image()
    • register_image_to_image()
    • resize()
    • resize_image_fit_aspect_ratio()
    • warpPerspective()
  • Module contents
• xrf_explorer.server.image_to_cube_selection package
  • Submodules
  • xrf_explorer.server.image_to_cube_selection.image_to_cube_selection module
    • CubeType
      • CubeType.Elemental
      • CubeType.Raw
    • SelectionType
      • SelectionType.Polygon
      • SelectionType.Rectangle
    • compute_selection_mask()
    • convexHull()
    • deregister_coord()
    • fillPoly()
    • getPerspectiveTransform()
    • get_scaled_cube_coordinates()
    • get_selection()
    • imread()
    • perspectiveTransform()
    • perspective_transform_coord()
  • Module contents
• xrf_explorer.server.routes package
  • Submodules
  • xrf_explorer.server.routes.color_segmentation module
    • get_color_cluster_bitmask()
    • get_color_clusters()
  • xrf_explorer.server.routes.dim_reduction module
    • get_dr_embedding()
    • get_dr_embedding_mapping()
    • get_dr_overlay()
  • xrf_explorer.server.routes.elemental_cube module
    • convert_elemental_cube()
    • data_cube_recipe()
    • data_cube_size()
    • elemental_map()
    • list_element_averages()
    • list_element_averages_selection()
    • list_element_names()
  • xrf_explorer.server.routes.general module
    • api()
  • xrf_explorer.server.routes.helper module
    • encode_selection()
    • parse_selection()
    • validate_config()
  • xrf_explorer.server.routes.images module
    • contextual_image()
    • contextual_image_recipe()
    • contextual_image_size()
  • xrf_explorer.server.routes.project module
    • create_data_source_dir()
    • datasource_files()
    • delete_data_source()
    • get_workspace()
    • list_accessible_data_sources()
    • remove_data_source()
    • upload_chunk()
  • xrf_explorer.server.routes.spectral_cube module
    • bin_raw_data()
    • get_average_data()
    • get_element_spectra()
    • get_offset()
    • get_selection_spectra()
  • Module contents
• xrf_explorer.server.spectra package
  • Submodules
  • xrf_explorer.server.spectra.spectra module
    • ElementLines
    • gaussian_convolve()
    • get_average_global()
    • get_average_selection()
    • get_element_spectrum()
    • get_theoretical_data()
  • Module contents

Module contents

This is the backend code