tests.file_system package

Submodules

tests.file_system.test_element_data module

class TestElementalData

Bases: object

CUSTOM_CONFIG_PATH: str = 'tests/resources/configs/elemental-data.yml'

DATA_CUBE_CSV: str = 'test.csv'

DATA_CUBE_DMS: str = 'test.dms'

ELEMENTS: list[str] = ['Secret', 'Element']

NAME_CUBE_FROM_CSV: str = 'cube_from_csv'

NON_EXISTING_CUBE: str = 'non-existing.dms'

PATH_TO_TEST_FOLDER: str = 'tests/resources/file_system/test_elemental_data'

RAW_ELEMENTAL_CUBE: ndarray = array([[[-1., -2., -3.],         [-4., -5., -6.],         [-7., -8., -9.]],         [[ 1.,  2.,  3.],         [ 4.,  5.,  6.],         [ 7.,  8.,  9.]]], dtype=float32)

SOURCE_FOLDER_CSV: str = 'csv'

SOURCE_FOLDER_DMS: str = 'dms'

do_test_get_element_names(source, caplog)

do_test_get_elemental_cube(source, caplog)

do_test_get_elemental_map(source, caplog)

setup_environment()

test_csv_to_dms(caplog)

test_csv_to_dms_directly(caplog)

test_get_element_averages(caplog)

test_get_element_averages_invalid_data_source(caplog)

test_get_element_averages_selection(caplog)

test_get_element_names(caplog)

test_get_element_names_invalid_data_source(caplog)

test_get_elemental_cube(caplog)

test_get_elemental_map(caplog)

test_get_elemental_map_invalid_type(caplog)

test_get_short_element_names_invalid_data_source(caplog)

test_to_dms_cube_name_includes_file_extension(caplog)

test_to_dms_invalid_folder_path(caplog)

tests.file_system.test_file_upload module

class TestUploadFileToServer

Bases: object

CUSTOM_CONFIG_PATH: str = 'tests/resources/configs/upload-file-server-backend.yml'

CUSTOM_CONFIG_PATH_NO_SOURCES: str = 'tests/resources/configs/upload-file-server-backend-no-sources.yml'

UPLOAD_FILE_PATH: str = 'tests/resources/file_system/txt-file.txt'

static get_filestorage_object(path: str)

test_get_data_source_files(caplog)

test_get_data_source_files_invalid_config()

test_get_data_source_files_invalid_path()

test_get_data_source_names_invalid_config()

test_get_file_names()

test_no_file_names()

tests.file_system.test_spectral module

class TestSpectral

Bases: object

CUSTOM_CONFIG_PATH: str = 'tests/resources/configs/spectra.yml'

DATA_SOURCE_FOLDER_NAME: str = 'spectra_source'

EMPTY_SOURCE_NAME: str = 'empty_source'

NO_OFFSET_NAME: str = 'no_offset_source'

NO_RAW_SOURCE_NAME: str = 'no_raw_source'

NO_WORKSPACE_NAME: str = 'wo_workspace_source'

RESOURCES_PATH: Path = PosixPath('tests/resources')

TEST_RAW_PATH: str = 'tests/resources/spectra/data/spectra_source/data.raw'

WRONG_SIZE_NAME: str = 'wrong_size_source'

numpy_to_raw(array: ndarray, path: str)

Writes a numpy array to a raw file.

Parameters:

• array – The array to write.

• path – The path to write the file to.

setup_environment()

test_bin_data_()

test_bin_data_default_params()

test_bin_data_empty_rpl(caplog)

test_bin_data_identity()

test_bin_data_no_raw(caplog)

test_bin_data_wrong_size(caplog)

test_get_spectra_params()

test_get_spectra_params_file_not_found()

test_parse_rpl()

test_parse_rpl_empty_file(caplog)

test_parse_rpl_file_not_found(caplog)

test_update_bin_params()

test_update_bin_params_default()

test_update_bin_params_no_offset()

tests.file_system.test_workspace_handler module

class TestWorkspaceHandler

Bases: object

CUSTOM_CONFIG_PATH: str = 'tests/resources/configs/workspace_handler.yml'

CUSTOM_DATA_FOLDER: str = 'tests/resources/file_system/test_workspace_handler'

DATASOURCE_NAME: str = 'a_datasource'

DATASOURCE_NAME_NO_WORKSPACE: str = 'no_datasource'

ELEMENTAL_CUBE_NAME: str = 'elemental cube'

test_config_not_found_get_workspace(caplog)

test_config_not_found_update_workspace(caplog)

test_datasource_not_found_get_workspace(caplog)

test_datasource_not_found_update_workspace(caplog)

test_get_base_image_name()

test_get_base_image_name_no_config(caplog)

test_get_base_image_name_no_workspace()

test_get_base_image_path_no_config(caplog)

test_get_base_image_path_no_filepath()

test_get_elemental_cube_path_from_name_invalid_name(caplog)

test_get_elemental_cube_path_from_name_no_config(caplog)

test_get_elemental_cube_path_from_name_no_workspace()

test_get_get_workspace_dict_no_config(caplog)

test_get_spectral_cube_recipe_path_no_config(caplog)

test_get_spectral_cube_recipe_path_no_workspace()

test_update_workspace(caplog)

test_workspace_found(caplog)

Module contents